Unconventional Computing 2005: From Cellular Automata to by Christof Teuscher, Andrew Adamatzky

By Christof Teuscher, Andrew Adamatzky

THE e-book BRINGS jointly paintings FROM A MULTIDISCIPLINARY middle OF SCIENTISTS who're operating within the box OF UNCONVENTIONAL COMPUTING. THE aim was once to supply a standard floor FOR conversation AND interplay, to focus on the newest ADVANCES, AND to debate the most instructions FOR the long run. subject matters comprise PROGRAMMING OF CHEMICAL platforms, EVOLVING LOGICAL GATES IN LIQUID CRYSTAL, picture PROCESSING IN CHEMICAL MEDIA, REACTION-DIFFUSION digital CIRCUITS FOR COMPUTATION AND trend iteration, RULE MIGRATION IN mobile AUTOMATA, MULTI-STATE QUANTUM AUTOMATA, DNA COMPUTING OF SHORTEST direction difficulties, and synthetic CHEMISTRIES. THE PAPERS accumulated during this publication offer a very good evaluation OF scorching examine themes within the bright box OF UNCONVENTIONAL COMPUTING.

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By Christof Teuscher, Andrew Adamatzky

THE e-book BRINGS jointly paintings FROM A MULTIDISCIPLINARY middle OF SCIENTISTS who're operating within the box OF UNCONVENTIONAL COMPUTING. THE aim was once to supply a standard floor FOR conversation AND interplay, to focus on the newest ADVANCES, AND to debate the most instructions FOR the long run. subject matters comprise PROGRAMMING OF CHEMICAL platforms, EVOLVING LOGICAL GATES IN LIQUID CRYSTAL, picture PROCESSING IN CHEMICAL MEDIA, REACTION-DIFFUSION digital CIRCUITS FOR COMPUTATION AND trend iteration, RULE MIGRATION IN mobile AUTOMATA, MULTI-STATE QUANTUM AUTOMATA, DNA COMPUTING OF SHORTEST direction difficulties, and synthetic CHEMISTRIES. THE PAPERS accumulated during this publication offer a very good evaluation OF scorching examine themes within the bright box OF UNCONVENTIONAL COMPUTING.

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Additional info for Unconventional Computing 2005: From Cellular Automata to Wetware

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The shortest path problem has been selected for consideration of using the proposed technique. In this approach, the cost of an edge is encoded as a direct-proportional length oligos. After an initial pool generation and amplification, since numerous numbers of solution candidates are generated, by using the standard bio-molecular laboratory operations, it is possible to extract the optimal combination which represents the solution to the shortest path problem. 2 The Shortest Path Problem START 70 V1 V2 60 40 40 V5 50 V4 END 35 25 V4 Fig.

875 µl ddH2 0 (Maxim Biotech). The reaction consists of 25 cycles and for each cycles, the appropriate temperature are as follow: – 94o C for 30 s – 55o C for 30 s – 74o C for 10 s which is the same as POA. The sequences used as primers are AAAGCTCGTCGTTTAGGAGC (V1 ) and GCACCCACCGAGACATTATC (V5 ). 1 M The Shortest Path V1-V3-V4-V5 (100bp) Fig. 6. Computation output on 10% polyacrylamide gel. Lane M denotes 20-bp ladder and lane 1 is the product of PCR. In order to visualize the result of the computation, the product of PCR is subjected to polyacrylamide gel electrophoresis for 40 minutes at Teuscher C.

Teuscher C. and Adamatzky A. ) Unconventional Computing 2005: From Cellular Automata to Wetware (Luniver Press, 2005). ISBN-10: 095511702X ISBN-13: 978-0955117022 Experimental DNA Computing for Shortest Path Problem 35 In order to generate the initial pool of the direct-proportional lengthbased DNA computing for the example problem by using POA method, the input to the computation are all the synthesized oligos as listed in Tab. 3 and the complement sequences for each nodes, which are listed in Tab.

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